Emmanuel Soubies

Conference Papers

2023	MAP-Informed Unrolled Algorithms for Hyper-parameter Estimation. IEEE-ICIP. Pascal Nguyen, Emmanuel Soubies, and Caroline Chaux. [hal] Deep Unrolling for Nonconvex Robust Principal Component Analysis. IEEE-MLSP. Elizabeth Z. C. Tan, Caroline Chaux, Emmanuel Soubies, and Vincent Y. F. Tan. [hal] Algorithmes de Visualisation de Non-Identifiabilité. GRETSI. Nathanaël Munier, Emmanuel Soubies, and Pierre Weiss. [hal] Optical Diffraction Tomography Meets Fluorescence Localization Microscopy. ISCS. Thanh-an Pham, Emmanuel Soubies, Ferréol Soulez, and Michael Unser. [hal] [video]
2021	Safe Screening for Sparse Regression with the Kullback-Leibler Divergence. IEEE-ICASSP Cássio F. Dantas, Emmanuel Soubies, and Cédric Févotte. [hal] [code] Diffraction Tomography from Single-Molecule Localization Microscopy: Numerical Feasibility. IEEE-ISBI. (Runner-up for Best Student Paper Award) Thanh-an Pham, Emmanuel Soubies, Ferréol Soulez, and Michael Unser. [hal]
2020	Adaptive Regularization for Three-dimensional Optical Diffraction Tomography. IEEE-ISBI. (Finalist for Best Student Paper Award) Thanh-an Pham, Emmanuel Soubies, Ahmed Ayoub, Demetri Psaltis, and Michael Unser. [hal] Dictionary Learning with Statistical Sparsity in the Presence of Noise. EUSIPCO. Shayan Aziznejad, Emmanuel Soubies, and Michael Unser. [pdf] Analysis of Short-Time Orthogonal Transform Learning for NMF. ITWIST Sixin Zhang, Emmanuel Soubies, and Cédric Févotte. User-friendly Building of Reconstruction Algorithms with GlobalBioIm. QBI. Laurène Donati, Emmanuel Soubies, and Michael Unser. [pdf] [poster] [see more]
2019	Improving Three-dimensional MA-TIRF Reconstruction with Deconvolution and Background Estimation. IEEE-ISBI. Emmanuel Soubies, Laure Blanc-Féraud, Sébastien Schaub, Ellen Van Obberghen-Schilling. [hal] [code] Closed-Form Expression of the Fourier Ring-Correlation for Single-Molecule Localization Microscopy. IEEE-ISBI. (Runner-up for Best Student Paper Award) Thanh-an Pham, Emmanuel Soubies, Daniel Sage, and Michael Unser. [hal] [code] Inner-Loop-Free ADMM for Cryo-EM. IEEE-ISBI. Laurène Donati, Emmanuel Soubies, and Michael Unser. [hal] Joint Density Map and Continuous Angular Refinement in Cryo-EM. IS&T EI. Mona Zehni, Laurène Donati, Emmanuel Soubies, Zhizhen Zhao, Minh N. Do, Michael Unser. [pdf] [code] On the Local Minimizers of the CEL0 Relaxation. SPARS. Emmanuel Soubies, Laure Blanc-Féraud and Gilles Aubert. [hal] [poster] The Sliding Frank-Wolfe Algorithm for the BLASSO. SPARS. Quentin Denoyelle, Vincent Duval, Gabriel Peyré, and Emmanuel Soubies. [hal] [code]
2018	Phaseless Diffraction Tomography with Regularized Beam Propagation. IEEE-ISBI. Thanh-an Pham, Emmanuel Soubies, Joowon Lim, Alexandre Goy, Ferréol Soulez, Demetri Psaltis and Michael Unser. [hal]
2017	High Density Molecule Localization for Super-Resolution Microscopy Using CEL0 Based Sparse Approximation. IEEE-ISBI. Simon Gazagnes, Emmanuel Soubies and Laure Blanc-Féraud. [hal] [code] GlobalBioIm: A Unifying Computational Framework for Solving Inverse Problems. OSA-COSI. Michael Unser, Emmanuel Soubies, Ferréol Soulez, Michael McCann and Laurène Donati. [pdf] [website] Sparse Super-Resolution from Laplace Measurements. SPARS. Quentin Denoyelle, Emmanuel Soubies, Vincent Duval and Gabriel Peyré. [pdf] Quelles Relaxations Continues pour le Critère l2-l0? GRETSI. Emmanuel Soubies, Laure Blanc-Féraud and Gilles Aubert. [hal] [poster]
2016	A Framework for Multi-Angle TIRF Microscope Calibration. IEEE-ISBI. Emmanuel Soubies, Sébastien Schaub, Agata Radwanska, Ellen Van Obberghen-Schilling, Laure Blanc-Féraud and Gilles Aubert. [hal]
2015	Cells Detection Using Segmentation Competition. IEEE-ISBI. Emmanuelle Poulain, Sylvain Prigent, Emmanuel Soubies and Xavier Descombes. [hal] L0-Optimization for Channel and DOA Sparse Estimation. IEEE-CAMSAP. Adilson Chinatto, Emmanuel Soubies, Cynthia Junqueira, João M. T. Romano, Pascal Larzabal, Jean-Pierre Barbot and Laure Blanc-Féraud. [hal] CEL0: A Continuous Alternative to l0 Penalty. SPARS. Emmanuel Soubies, Laure Blanc-Féraud and Gilles Aubert. [hal] [poster] Seuillage CEL0 pour la Minimisation l2-l0 : Comparaisons avec IHT. GRETSI. Emmanuel Soubies, Laure Blanc-Féraud and Gilles Aubert. [hal]
2014	Sparse Reconstruction from Multi-Angle TIRF Microscopy. IEEE-ICIP. Emmanuel Soubies, Laure Blanc-Féraud, Sébastien Schaub and Gilles Aubert. [hal] A 3D Model with Shape Prior Information for Biological Structures Reconstruction using Multiple-Angle Total Internal Reflection Fluorescence Microscopy. IEEE-ISBI. Emmanuel Soubies, Laure Blanc-Féraud, Sébastien Schaub and Gilles Aubert. [hal]
2013	A 3D Segmentation Algorithm for Ellipsoidal Shapes. Application to Nuclei Extraction. ICPRAM. Emmanuel Soubies, Pierre Weiss and Xavier Descombes. [hal]