Conference Papers

2021

Safe Screening for Sparse Regression with the Kullback-Leibler Divergence. IEEE-ICASSP
Cássio F. Dantas, Emmanuel Soubies, and Cédric Févotte. [hal] [code]

Diffraction tomography from single-molecule localization microscopy: Numerical Feasibility.
IEEE-ISBI. (Runner-up for Best Student Paper Award)
Thanh-an Pham, Emmanuel Soubies, Ferréol Soulez, and Michael Unser. [hal]

2020

Adaptive Regularization for Three-dimensional Optical Diffraction Tomography.
IEEE-ISBI. (Finalist for Best Student Paper Award)
Thanh-an Pham, Emmanuel Soubies, Ahmed Ayoub, Demetri Psaltis, and Michael Unser. [hal]

Dictionary Learning with Statistical Sparsity in the Presence of Noise. EUSIPCO.
Shayan Aziznejad, Emmanuel Soubies, and Michael Unser. [pdf]

Analysis of Short-Time Orthogonal Transform Learning for NMF. ITWIST
Sixin Zhang, Emmanuel Soubies, and Cédric Févotte.

User-friendly Building of Reconstruction Algorithms with GlobalBioIm. QBI.
Laurène Donati, Emmanuel Soubies, and Michael Unser. [pdf] [poster] [see more]

2019

Improving Three-dimensional MA-TIRF Reconstruction with Deconvolution and Background Estimation. IEEE-ISBI.
Emmanuel Soubies, Laure Blanc-Féraud, Sébastien Schaub, Ellen Van Obberghen-Schilling. [hal] [code]

Closed-Form Expression of the Fourier Ring-Correlation for Single-Molecule Localization Microscopy. IEEE-ISBI. (Runner-up for Best Student Paper Award)
Thanh-an Pham, Emmanuel Soubies, Daniel Sage, and Michael Unser. [hal] [code]

Inner-Loop-Free ADMM for Cryo-EM. IEEE-ISBI.
Laurène Donati, Emmanuel Soubies, and Michael Unser. [hal]

Joint Density Map and Continuous Angular Refinement in Cryo-EM. IS&T EI.
Mona Zehni, Laurène Donati, Emmanuel Soubies, Zhizhen Zhao, Minh N. Do, Michael Unser. [pdf] [code]

On the Local Minimizers of the CEL0 Relaxation. SPARS.
Emmanuel Soubies, Laure Blanc-Féraud and Gilles Aubert. [hal] [poster]

The Sliding Frank-Wolfe Algorithm for the BLASSO. SPARS.
Quentin Denoyelle, Vincent Duval, Gabriel Peyré, and Emmanuel Soubies. [pdf]

2018 Phaseless Diffraction Tomography with Regularized Beam Propagation. IEEE-ISBI.
Thanh-an Pham, Emmanuel Soubies, Joowon Lim, Alexandre Goy, Ferréol Soulez, Demetri Psaltis and Michael Unser. [hal]
2017

Quelles Relaxations Continues pour le Critère l2-l0? GRETSI.
Emmanuel Soubies, Laure Blanc-Féraud and Gilles Aubert. [hal] [poster]

GlobalBioIm: A Unifying Computational Framework for Solving Inverse Problems. OSA-COSI.
Michael Unser, Emmanuel Soubies, Ferréol Soulez, Michael McCann and Laurène Donati. [pdf] [website]

Sparse Super-Resolution from Laplace Measurements. SPARS.
Quentin Denoyelle, Emmanuel Soubies, Vincent Duval and Gabriel Peyré. [pdf]

High Density Molecule Localization for Super-Resolution Microscopy Using CEL0 Based Sparse Approximation. IEEE-ISBI.
Simon Gazagnes, Emmanuel Soubies and Laure Blanc-Féraud. [hal] [code]

2016

A Framework for Multi-Angle TIRF Microscope Calibration. IEEE-ISBI.
Emmanuel Soubies, Sébastien Schaub, Agata Radwanska, Ellen Van Obberghen-Schilling, Laure Blanc-Féraud and Gilles Aubert. [hal]

2015

L0-Optimization for Channel and DOA Sparse Estimation. IEEE-CAMSAP.
Adilson Chinatto, Emmanuel Soubies, Cynthia Junqueira, João M. T. Romano, Pascal Larzabal, Jean-Pierre Barbot and Laure Blanc-Féraud. [hal]

Seuillage CEL0 pour la Minimisation l2-l0 : Comparaisons avec IHT. GRETSI.
Emmanuel Soubies, Laure Blanc-Féraud and Gilles Aubert. [hal]

CEL0: A Continuous Alternative to l0 Penalty. SPARS.
Emmanuel Soubies, Laure Blanc-Féraud and Gilles Aubert. [hal] [poster]

Cells Detection Using Segmentation Competition. IEEE-ISBI.
Emmanuelle Poulain, Sylvain Prigent, Emmanuel Soubies and Xavier Descombes. [hal]

2014

Sparse Reconstruction from Multi-Angle TIRF Microscopy. IEEE-ICIP.
Emmanuel Soubies, Laure Blanc-Féraud, Sébastien Schaub and Gilles Aubert. [hal]

A 3D Model with Shape Prior Information for Biological Structures Reconstruction using Multiple-Angle Total Internal Reflection Fluorescence Microscopy. IEEE-ISBI.
Emmanuel Soubies, Laure Blanc-Féraud, Sébastien Schaub and Gilles Aubert. [hal]

2013

A 3D Segmentation Algorithm for Ellipsoidal Shapes. Application to Nuclei Extraction. ICPRAM.
Emmanuel Soubies, Pierre Weiss and Xavier Descombes. [hal]

Emmanuel Soubies - 2014