Opensource codes associated with the publications I coauthored.
GlobalBioIm Library A Matlab library for solving inverse problems. [Code] [Paper] [Website] 

MultiAngle Total Internal Reflection Fluorescence Microscopy (MATIRFM) Reconstruction algorithm that performs jointly volume reconstruction, deconvolution, and background estimation. [Code] [Paper Sci. Rep.] [Paper ISBI] 

Optical Diffraction Tomography (ODT) Reconstruction method based on the exact LippmannSchwinger forward model and the FISTA algorithm. [Code] [Paper Opt. Exp.] [Paper TCI] 

Structured Illumination Microscopy (SIM) Singleslice SIM reconstruction algorithm based on an innerloopfree ADMM. This method enables the estimation of the outoffocus signal that usually affects the reconstructions obtained from 2D acquisitions. [Code] [Paper] 

SingleParticle Cryo Electron Microscopy (SP CryoEM) Joint angular refinement and reconstruction algorithm for singleparticle CryoEM. [code] [Paper] 

Single Molecule Localization Microscopy (SMLM)

Safe Screening for Sparse Optimization A safe screening approach that exploits local strong concavity properties of the dual function to accelerate the convergence of iterative solvers. [Code] [Paper] 

Sliding FrankWolfe algorithm Gridless method that minimizes the BLASSO. [Code] [Paper] 

L2  CEL0 Minimization Examples of the use of the FBS and IRL1 algorithms to solve the CEL0 penalized least squares problem. [Code] [Paper SIOPT] [Paper SIIMS] 
Emmanuel Soubies  2014