Opensource codes associated with the publications I coauthored.
GlobalBioIm Library A Matlab library for solving inverse problems. [Code] [Paper] [Website] 

Structured Illumination Microscopy (SIM) 

Single Molecule Localization Microscopy (SMLM)


Optical Diffraction Tomography (ODT) Reconstruction method based on the exact LippmannSchwinger forward model and the FISTA algorithm. [Code] [Paper Opt. Exp.] [Paper TCI] 

MultiAngle Total Internal Reflection Fluorescence Microscopy (MATIRFM) Reconstruction algorithm that performs jointly volume reconstruction, deconvolution, and background estimation. [Code] [Paper Sci. Rep.] [Paper ISBI] 

SingleParticle Cryo Electron Microscopy (SP CryoEM) Joint angular refinement and reconstruction algorithm for singleparticle CryoEM. [code] [Paper] 

Image Denoising Automatic Tuning of Denoising Algorithms Parameters without Ground Truth. [code] [Paper] 
Safe screening with sphere refinement for sparse optimization Safe screening approach that exploits local strong concavity properties of the dual function to accelerate the convergence of iterative solvers. [Code] [Paper JMLR] [Paper SPL] 

Sliding FrankWolfe algorithm Gridless method that minimizes the BLASSO. [Code] [Paper] 

L2  CEL0 Minimization Examples of the use of the FBS and IRL1 algorithms to solve the CEL0 penalized least squares problem. [Code] [Paper SIOPT] [Paper SIIMS] 
Emmanuel Soubies  2014